\BOOKMARK [1][-]{section*.1}{ABSTRACT}{section*.2}% 1
\BOOKMARK [1][-]{section.1}{General ideas}{}% 2
\BOOKMARK [2][-]{subsection.1.1}{Extension to large radius}{section.1}% 3
\BOOKMARK [1][-]{section.2}{Compilation and Basic Usage}{}% 4
\BOOKMARK [2][-]{subsection.2.1}{Compilation}{section.2}% 5
\BOOKMARK [1][-]{section.3}{Setting up and running the code on Nautilus}{}% 6
\BOOKMARK [2][-]{subsection.3.1}{Prerequisites/Tricks}{section.3}% 7
\BOOKMARK [2][-]{subsection.3.2}{Directories and Files}{section.3}% 8
\BOOKMARK [2][-]{subsection.3.3}{Job submission and execution}{section.3}% 9
\BOOKMARK [2][-]{subsection.3.4}{Other}{section.3}% 10
\BOOKMARK [1][-]{section.4}{Inputs}{}% 11
\BOOKMARK [2][-]{subsection.4.1}{GRMHD simulation snapshots}{section.4}% 12
\BOOKMARK [2][-]{subsection.4.2}{Coordinates and transformations}{section.4}% 13
\BOOKMARK [2][-]{subsection.4.3}{Average density and temperature profiles}{section.4}% 14
\BOOKMARK [2][-]{subsection.4.4}{Cyclo-synchrotron emissivities and rotativities}{section.4}% 15
\BOOKMARK [1][-]{section.5}{Modes of operation}{}% 16
\BOOKMARK [2][-]{subsection.5.1}{Usage}{section.5}% 17
\BOOKMARK [2][-]{subsection.5.2}{m\137space}{section.5}% 18
\BOOKMARK [2][-]{subsection.5.3}{m\137quick}{section.5}% 19
\BOOKMARK [2][-]{subsection.5.4}{m\137conv}{section.5}% 20
\BOOKMARK [2][-]{subsection.5.5}{m\137surf}{section.5}% 21
\BOOKMARK [2][-]{subsection.5.6}{m\137imag}{section.5}% 22
\BOOKMARK [2][-]{subsection.5.7}{m\137sear}{section.5}% 23
\BOOKMARK [2][-]{subsection.5.8}{m\137ts}{section.5}% 24
\BOOKMARK [1][-]{section.6}{Core routines}{}% 25
\BOOKMARK [2][-]{subsection.6.1}{init}{section.6}% 26
\BOOKMARK [2][-]{subsection.6.2}{intensity}{section.6}% 27
\BOOKMARK [2][-]{subsection.6.3}{imaging}{section.6}% 28
\BOOKMARK [2][-]{subsection.6.4}{evalpointzero}{section.6}% 29
\BOOKMARK [2][-]{subsection.6.5}{solvetrans}{section.6}% 30
\BOOKMARK [2][-]{subsection.6.6}{transnew}{section.6}% 31
\BOOKMARK [2][-]{subsection.6.7}{geoint}{section.6}% 32
\BOOKMARK [2][-]{subsection.6.8}{geodes}{section.6}% 33
\BOOKMARK [2][-]{subsection.6.9}{emis}{section.6}% 34
\BOOKMARK [2][-]{subsection.6.10}{Function solte in transfer\137quad}{section.6}% 35
\BOOKMARK [1][-]{section.7}{Code variables}{}% 36
\BOOKMARK [1][-]{section.8}{Supporting MATHEMATICA 8 scripts}{}% 37
\BOOKMARK [2][-]{subsection.8.1}{check\137GRMHD\137code.nb}{section.8}% 38
\BOOKMARK [3][-]{subsubsection.8.1.1}{Emis functions}{subsection.8.1}% 39
\BOOKMARK [3][-]{subsubsection.8.1.2}{Evalpointzero functions}{subsection.8.1}% 40